TY - GEN
T1 - Modeling hierarchical spatial and temporal patterns of naturalistic fmri volume via volumetric deep belief network with neural architecture search
AU - Ren, Yudan
AU - Tao, Zeyang
AU - Zhang, Wei
AU - Liu, Tianming
N1 - Funding Information:
This work was supported by The National Natural Science Foundation of China (Grant. No. 62006187), and The Natural Science Foundation of Shaanxi Province (Grant. No. 2020JQ-606).
Publisher Copyright:
© 2021 IEEE.
PY - 2021/4/13
Y1 - 2021/4/13
N2 - The functional magnetic resonance imaging under naturalistic paradigm (NfMRI) exhibited promising ability in approximating the functional activities of brain in real life. Deep learning models such as convolutional neural network (CNN), convolutional autoencoder (CAE) and deep belief network (DBN) have shown notable performance in identifying temporal patterns and functional brain networks (FBNs) from fMRI data, in which most of these studies directly modelled the functional brain activities embedded in fMRI data. However, the hierarchical temporal and spatial organization of brain function under naturalistic condition has been rarely investigated and it is unknown whether it is possible to directly derive hierarchical FBNs from volumetric fMRI data using deep learning models. In addition, due to the high dimensionality of fMRI volume images and very large number of training parameters, the manual design of neural architecture for deep learning model is time-consuming and not optimal, thus awaiting further advances in automatic searching framework to learn optimal network architecture for deep learning model. To tackle these problems, we proposed a deep belief network (DBN) and neural architecture search (NAS) combined framework (Volumetric NAS-DBN) to directly model the fMRI volume images under naturalistic condition. Our results demonstrated that the DBN with optimal architecture can effectively characterize hierarchical organization of spatial distribution and temporal responses from volumetric fMRI data under naturalistic condition.
AB - The functional magnetic resonance imaging under naturalistic paradigm (NfMRI) exhibited promising ability in approximating the functional activities of brain in real life. Deep learning models such as convolutional neural network (CNN), convolutional autoencoder (CAE) and deep belief network (DBN) have shown notable performance in identifying temporal patterns and functional brain networks (FBNs) from fMRI data, in which most of these studies directly modelled the functional brain activities embedded in fMRI data. However, the hierarchical temporal and spatial organization of brain function under naturalistic condition has been rarely investigated and it is unknown whether it is possible to directly derive hierarchical FBNs from volumetric fMRI data using deep learning models. In addition, due to the high dimensionality of fMRI volume images and very large number of training parameters, the manual design of neural architecture for deep learning model is time-consuming and not optimal, thus awaiting further advances in automatic searching framework to learn optimal network architecture for deep learning model. To tackle these problems, we proposed a deep belief network (DBN) and neural architecture search (NAS) combined framework (Volumetric NAS-DBN) to directly model the fMRI volume images under naturalistic condition. Our results demonstrated that the DBN with optimal architecture can effectively characterize hierarchical organization of spatial distribution and temporal responses from volumetric fMRI data under naturalistic condition.
KW - Deep belief network
KW - Hierarchical functional brain networks
KW - Naturalistic fMRI
KW - Neural architecture search
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U2 - 10.1109/ISBI48211.2021.9433811
DO - 10.1109/ISBI48211.2021.9433811
M3 - Conference contribution
AN - SCOPUS:85107232343
T3 - Proceedings - International Symposium on Biomedical Imaging
SP - 130
EP - 134
BT - 2021 IEEE 18th International Symposium on Biomedical Imaging, ISBI 2021
PB - IEEE Computer Society
T2 - 18th IEEE International Symposium on Biomedical Imaging, ISBI 2021
Y2 - 13 April 2021 through 16 April 2021
ER -