Signal sampling for efficient sparse representation of resting state FMRI data

Bao Ge, Jin Wang, Jinglei Lv, Shu Zhang, Shijie Zhao, Wei Zhang, Qinghua Zhao, Xiang Li, Xi Jiang, Junwei Han, Lei Guo, Tianming Liu

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Scopus citations

Abstract

As brain imaging data such as fMRI is growing explosively, how to reduce its size but not to lose much information becomes a pressing problem. To address this problem, this work aims to represent resting state fMRI (rs-fMRI) signals of a whole brain via a statistical sampling based sparse representation. Specifically, we improve the online dictionary learning and sparse coding algorithm by adding a sampling step before the whole-brain sparse representation. Our comparison experiments demonstrated that this sampling-enabled sparse representation method can speedup by ten times without losing much information. In particular, our results showed that anatomical landmark-guided sampling is substantially better than statistical random sampling in reconstructing concurrent functional brain networks from the Human Connectome Project (HCP) rs-fMRI data.

Original languageEnglish (US)
Title of host publication2015 IEEE 12th International Symposium on Biomedical Imaging, ISBI 2015
PublisherIEEE Computer Society
Pages1360-1363
Number of pages4
ISBN (Electronic)9781479923748
DOIs
StatePublished - Jul 21 2015
Externally publishedYes
Event12th IEEE International Symposium on Biomedical Imaging, ISBI 2015 - Brooklyn, United States
Duration: Apr 16 2015Apr 19 2015

Publication series

NameProceedings - International Symposium on Biomedical Imaging
Volume2015-July
ISSN (Print)1945-7928
ISSN (Electronic)1945-8452

Conference

Conference12th IEEE International Symposium on Biomedical Imaging, ISBI 2015
Country/TerritoryUnited States
CityBrooklyn
Period4/16/154/19/15

Keywords

  • DICCCOL
  • DTI
  • resting state fMRI
  • resting state networks
  • sampling

ASJC Scopus subject areas

  • Biomedical Engineering
  • Radiology Nuclear Medicine and imaging

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