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Deep Learning–Based Automated Imaging Classification of ADPKD

  • HALT Polycystic Kidney Disease Study Group
    ,
  • Youngwoo Kim
    ,
  • Seonah Bu
    ,
  • Cheng Tao
    ,
  • Kyongtae T. Bae(corresponding author)
    ,
  • Theodore Steinman
*Corresponding author for this work
  • Kumoh National Institute of Technology
    ,
  • Korea Institute of Industrial Technology
    ,
  • University of Pittsburgh
    ,
  • The University of Hong Kong
    ,
Scholary Output:
Contribution to journal
Article
Peer-review

Open access

Sustainable Development Goals

  • SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well

Abstract

Introduction: The Mayo imaging classification model (MICM) requires a prestep qualitative assessment to determine whether a patient is in class 1 (typical) or class 2 (atypical), where patients assigned to class 2 are excluded from the MICM application. Methods: We developed a deep learning–based method to automatically classify class 1 and 2 from magnetic resonance (MR) images and provide classification confidence utilizing abdominal T2-weighted MR images from 486 subjects, where transfer learning was applied. In addition, the explainable artificial intelligence (XAI) method was illustrated to enhance the explainability of the automated classification results. For performance evaluations, confusion matrices were generated, and receiver operating characteristic curves were drawn to measure the area under the curve. Results: The proposed method showed excellent performance for the classification of class 1 (97.7%) and 2 (100%), where the combined test accuracy was 98.01%. The precision and recall for predicting class 1 were 1.00 and 0.98, respectively, with F1-score of 0.99; whereas those for predicting class 2 were 0.87 and 1.00, respectively, with F1-score of 0.93. The weighted averages of precision and recall were 0.98 and 0.98, respectively, showing the classification confidence scores whereas the XAI method well-highlighted contributing regions for the classification. Conclusion: The proposed automated method can classify class 1 and 2 cases as accurately as the level of a human expert. This method may be a useful tool to facilitate clinical trials investigating different types of kidney morphology and for clinical management of patients with autosomal dominant polycystic kidney disease (ADPKD).

Publication Information

Output type

Scholary Output:
Contribution to journal
Article
Peer-review

Original language

English (US)

Pages from-to (Number of pages)

Pages 1802-1809 (8 pages)

Journal (Volume, Issue Number)

Kidney International Reports (Volume 9, Issue 6)

Publication milestones

  • Published - 06/2024

Publication status

Published - 06/2024

ISSN

2468-0249

Publication IDs

  • Scopus: 85191490565

Publication metrics

Metrics

Fractional count
1
Fractional count
0.02
Fractional count
49
Fractional count
0.98
Fractional count
1
Fractional count
1
Scopus
citations

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Citation count
1
Captures
15

Funding Details

This study has been conducted with the support of the Korea Institute of Industrial Technology as “Development of core technology for smart wellness care based on cleaner production process technology (Kitech-PEH23030)”. Sharing of data related to this study would be a violation of Health Insurance Portability and Accountability Act and policies provided by our institutional review board. YK and KTB designed the study. YK, CT, and KTB acquired clinical and imaging data. YK, SB, and KTB analyzed the data. YK and SB made the figures. YK and KTB drafted the manuscript. All the authors reviewed, revised, and approved the final version of the manuscript.
FunderFunding number
KITECH
Kitech-PEH23030