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Finding differentially expressed genes in high dimensional data: Rank based test statistic via a distance measure

  • Sunil Mathur(corresponding author)
    ,
  • Ajit Sadana
*Corresponding author for this work
Scholary Output:
Contribution to journal
Article
Peer-review

Abstract

We present a rank-based test statistic for the identification of differentially expressed genes using a distance measure. The proposed test statistic is highly robust against extreme values and does not assume the distribution of parent population. Simulation studies show that the proposed test is more powerful than some of the commonly used methods, such as paired t-test, Wilcoxon signed rank test, and significance analysis of microarray (SAM) under certain non-normal distributions. The asymptotic distribution of the test statistic, and the p-value function are discussed. The application of proposed method is shown using a real-life data set.

Publication Information

Output type

Scholary Output:
Contribution to journal
Article
Peer-review

Original language

English (US)

Pages from-to (Number of pages)

Pages 968-979 (12 pages)

Journal (Volume, Issue Number)

Statistical Methods in Medical Research (Volume 24, Issue 6)

Publication milestones

  • Published - 12/01/2015

Publication status

Published - 12/01/2015

ISSN

0962-2802

Publication IDs

  • Scopus: 84948409142
  • PubMed: 22240308

Publication metrics

Metrics

Fractional count
1
Fractional count
0.50
Fractional count
1
Fractional count
0.50
Fractional count
1
Fractional count
1
SciVal
Author count
2
SciVal
Paper percentile
23

Funding Details

This work was supported by the Mississippi INBRE [P20RR016476] funded by the National Center for Research Resources, National Institute of Health, USA. Acknowledgement