Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
- Ling Wu(corresponding author),
- Jia Chi Tan,
- Nicholas R.J. Gascoigne(corresponding author)
- National University of Singapore
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Abstract
Gene-of-interest (GOI) knockout is an important technique to study the genetic mechanisms of T cells. Here, we present a protocol to generate GOI double allele gene knockouts in primary human T cells by CRISPR, thus depleting proteins of interest expressed intracellularly or extracellularly in primary T cells. We describe steps for gRNA selection and efficiency validation, homology-directed repair (HDR) DNA template design and cloning, and genome editing and HDR gene insertion. We then detail clone isolation and GOI knockout validation. For complete details on the use and execution of this protocol, please refer to Wu et al.1
Publication Information
Output type
Scholary Output:
Contribution to journal
Article
Peer-reviewOriginal language
English (US)Article number
102445Journal (Volume, Issue Number)
STAR Protocols (Volume 4, Issue 3)Publication milestones
- Published - 09/15/2023
Publication status
Published - 09/15/2023
Publication IDs
- Scopus: 85164261216
- PubMed: 37432856
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Funding Details
We thank the flow cytometry core facility team of The Life Sciences Institute (LSI), NUS, for sorting. This work was funded by NUS ILO TAP grant: TAP2002019-04-25 , Singapore Ministry of Health’s National Medical Research Council : MOH-000523 , and Ministry of Education , NUHSRO/2020/110/T1/SEED-MAR/06 . L.W. and J.C.T. were supported by research scholarships from Yong Loo Lin School of Medicine.
We thank the flow cytometry core facility team of The Life Sciences Institute (LSI), NUS, for sorting. This work was funded by NUS ILO TAP grant: TAP2002019-04-25, Singapore Ministry of Health's National Medical Research Council: MOH-000523, and Ministry of Education, NUHSRO/2020/110/T1/SEED-MAR/06. L.W. and J.C.T. were supported by research scholarships from Yong Loo Lin School of Medicine. L.W. designed and conducted experiments and analyzed the data. J.C.T. performed the gRNA selection experiments. N.R.J.G. provided discussion and co-designed experiments. L.W. and N.R.J.G. wrote the paper, with input and final approval from all authors. National University of Singapore has filed a patent including some aspects of this work. Patent title: Engineered Immune Cells (PCT/SG2020/050090). Published September 10, 2020: WO 2020/180243 (L.W. N.R.J.G. and Joanna Brzostek).
FundersFunding numbers
Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore
PCT/SG2020/050090, WO 2020/180243
LSI
-NUS
MOH-000523, TAP2002019-04-25
MOE
NUHSRO/2020/110/T1/SEED-MAR/06
