TY - GEN
T1 - An approximate robotics algorithm to assemble a loop between two helices
AU - He, Jing
AU - Al Nasr, Kamal
PY - 2007
Y1 - 2007
N2 - We have developed an algorithm to assemble a loop in between two helices using the idea of the cyclic coordinate descent (CCD) that is an inverse kinematics approach in the field of robotics. Our method is a variant of the original CCD. It uses both the forward walk and the backward walk with different targets. A test of 20 cases suggests that the minimum Root Mean Square Deviation to native for the 500 assembled loops is comparable to that of the original CCD method but less number of the loops is needed. The results of the test suggest that the number of walks needed to reach the required accuracy can be significantly smaller than 50, the maximum number allowed in our method.
AB - We have developed an algorithm to assemble a loop in between two helices using the idea of the cyclic coordinate descent (CCD) that is an inverse kinematics approach in the field of robotics. Our method is a variant of the original CCD. It uses both the forward walk and the backward walk with different targets. A test of 20 cases suggests that the minimum Root Mean Square Deviation to native for the 500 assembled loops is comparable to that of the original CCD method but less number of the loops is needed. The results of the test suggest that the number of walks needed to reach the required accuracy can be significantly smaller than 50, the maximum number allowed in our method.
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U2 - 10.1109/BIBMW.2007.4425403
DO - 10.1109/BIBMW.2007.4425403
M3 - Conference contribution
AN - SCOPUS:44949175894
SN - 9781424416042
T3 - Proceedings - 2007 IEEE International Conference on Bioinformaticsand Biomedicine Workshops, BIBMW
SP - 74
EP - 79
BT - Proceedings - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW
T2 - 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW
Y2 - 2 November 2007 through 4 November 2007
ER -