PrepMS: TOF MS data graphical preprocessing tool

Yuliya V. Karpievitch; Elizabeth G. Hill; Adam J. Smolka; Jeffrey S. Morris; Kevin R. Coombes; Keith A. Baggerly; Jonas S. Almeida

doi:10.1093/bioinformatics/btl583

PrepMS: TOF MS data graphical preprocessing tool

Yuliya V. Karpievitch, Elizabeth G. Hill, Adam J. Smolka, Jeffrey S. Morris, Kevin R. Coombes, Keith A. Baggerly, Jonas S. Almeida

Research output: Contribution to journal › Article › peer-review

36 Scopus citations

Abstract

Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

Original language	English (US)
Pages (from-to)	264-265
Number of pages	2
Journal	Bioinformatics
Volume	23
Issue number	2
DOIs	https://doi.org/10.1093/bioinformatics/btl583
State	Published - 2007
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/btl583

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@article{11bc38a493d0484c8144730b684dac37,

title = "PrepMS: TOF MS data graphical preprocessing tool",

abstract = "Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.",

author = "Karpievitch, {Yuliya V.} and Hill, {Elizabeth G.} and Smolka, {Adam J.} and Morris, {Jeffrey S.} and Coombes, {Kevin R.} and Baggerly, {Keith A.} and Almeida, {Jonas S.}",

note = "Funding Information: The authors thank Dr Daniel Knapp for comments that substantially improved the manuscript. Y.V.K. is supported by NLM training grant 1-T15-LM07438. E.G.H. is partially supported by NIH/ NIDCR grant K25 DE016863. J.S.A. is supported by NHLBI Proteomics Initiative N01-HV-28181 (http://proteomics.musc. edu). J.S.M. and K.A.B. are supported by R01 grant CA-107304 from the NIH/NCI. A.J.S. is supported by NIH/NIDDK R01 DK064371.",

year = "2007",

doi = "10.1093/bioinformatics/btl583",

language = "English (US)",

volume = "23",

pages = "264--265",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "2",

}

TY - JOUR

T1 - PrepMS

T2 - TOF MS data graphical preprocessing tool

AU - Karpievitch, Yuliya V.

AU - Hill, Elizabeth G.

AU - Smolka, Adam J.

AU - Morris, Jeffrey S.

AU - Coombes, Kevin R.

AU - Baggerly, Keith A.

AU - Almeida, Jonas S.

N1 - Funding Information: The authors thank Dr Daniel Knapp for comments that substantially improved the manuscript. Y.V.K. is supported by NLM training grant 1-T15-LM07438. E.G.H. is partially supported by NIH/ NIDCR grant K25 DE016863. J.S.A. is supported by NHLBI Proteomics Initiative N01-HV-28181 (http://proteomics.musc. edu). J.S.M. and K.A.B. are supported by R01 grant CA-107304 from the NIH/NCI. A.J.S. is supported by NIH/NIDDK R01 DK064371.

PY - 2007

Y1 - 2007

N2 - Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

AB - Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.

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U2 - 10.1093/bioinformatics/btl583

DO - 10.1093/bioinformatics/btl583

M3 - Article

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AN - SCOPUS:33846690008

SN - 1367-4803

VL - 23

SP - 264

EP - 265

JO - Bioinformatics

JF - Bioinformatics

IS - 2

ER -

PrepMS: TOF MS data graphical preprocessing tool

Abstract

ASJC Scopus subject areas

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